Glyma07g09980 - SoyBase

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Report for Sequence Feature Glyma07g09980

Feature Type:	gene_model
Chromosome:	Gm07
Start:	8388203
stop:	8392683
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g09980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G49050	AT	Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein \| chr1:18150638-18153186 FORWARD LENGTH=583	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004190	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity	SoyBase	N/A	ISS
KOG1339	KOG	Aspartyl protease	JGI		ISS
PTHR13683	Panther	ASPARTYL PROTEASES	JGI		ISS
PTHR13683:SF98	Panther	CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED	JGI		ISS
PF00026	PFAM	Eukaryotic aspartyl protease	JGI		ISS
UniRef100_D7KDZ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aspartyl protease family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KDZ8_ARALL	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338F27	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338F27 related cluster n=1 Tax=unknown RepID=UPI0002338F27	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma07g09980

Locus	Gene Symbol	Protein Name
	LDL1-1	LSD1-like1 gene 1

Expression Patterns of Glyma07g09980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g09980

Paralog	Evidence	Comments
Glyma09g31780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g09980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g090000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g09980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g09980

Limit To All Plant Sequences

>Glyma07g09980.1   sequence type=CDS   gene model=Glyma07g09980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATGATCAATCTACTCAGATCAAAGGTGTTGTTATAATCTCCCTTCCACCACCAGATAACCCTTCTTTGGGCAAAACCATCACTGCTTTTGCTTTCTCTAATAACCCTTCTCCTCCCCCTCAACTTTTTATTCAACCCCATCAACACCAAAGTCAACAAACACACCCCAATGCTCAACATAACACTGATCCTCCACTTCAGTCCTACCCATCTAATCCTCAGCTTAGTTTTTCATTCAGAAGACTCTTCCACAGCACCCCAGTGAAGCTTTTCTCATTCTTTGGTACTCTTCTCTTTGCTCTCTTTCTCTATGGTTCTGTTTCTTCAACCACCACTGTGGACCTACGTGGCCGCAAGAATGATGGTGATGATGACAAAGCCACTTCATTTTTGTTCCCTTTGTTTCCGAAATTTGGTGTTTTGGGGCAGAAGGATTTGAAGCTCCAACTGGGGAAGCTTGTTCAAAAAGAGAAGTTTTTGACGCAAAGAGATGTTGGTGATGGTTCTGGGGTTGTGGCCGTTGACTCTTCATCCGTTTTTCCAGTCAGTGGAAATGTTTATCCAGATGGGTTGTATTTCACTATTTTACGTGTTGGAAATCCTCCAAAAAGTTATTTTCTTGATGTGGACACAGGGAGTGATTTAACTTGGATGCAGTGTGATGCTCCATGCAGAAGCTGTGGGAAGGGAGCACATGTTCAATACAAGCCAACAAGATCCAATGTAGTATCATCTGTGGACTCTCTCTGTTTGGATGTTCAGAAAAATCAGAAGAATGGACATCATGATGAAAGTTTGCTACAGTGCGACTATGAAATTCAATATGCAGATCATAGTTCTTCCTTGGGGGTTCTTGTTAGAGATGAGCTTCATCTTGTAACTACTAATGGATCCAAAACCAAGCTAAATGTTGTTTTTGGGTGTGGATATGATCAAGAAGGCTTAATTTTGAACACATTGGCTAAAACAGACGGAATCATGGGATTGAGTAGGGCAAAAGTCAGCCTACCCTACCAGTTAGCTAGTAAAGGGCTTATTAAGAATGTGGTTGGTCATTGCCTTAGCAATGATGGAGCTGGCGGTGGATACATGTTCTTAGGTGATGATTTTGTGCCATATTGGGGTATGAATTGGGTACCCATGGCCTATACCCTTACTACGGATTTATACCAAACTGAGATTCTTGGAATCAATTATGGAAATCGTCAACTCAAATTTGATGGCCAAAGCAAAGTAGGAAAAGTGTTTTTTGATAGTGGCAGTTCTTATACATATTTCCCAAAAGAGGCATACTTGGATCTTGTTGCTTCTCTTAATGAAGTTTCTGGGTTAGGACTTGTTCAAGATGATTCAGATACTACTTTACCCATTTGCTGGCAAGCAAATTTCCAAATCAGATCTATCAAAGATGTCAAGGATTACTTCAAGACCTTAACTCTTCGGTTCGGAAGCAAGTGGTGGATTTTGTCCACATTGTTTCAGATACCTCCAGAGGGTTACTTGATCATTAGTAACAAAGGCCATGTGTGCTTGGGAATCCTTGATGGTAGTAAAGTAAATGACGGATCCTCAATTATACTTGGAGACATTTCATTGAGAGGATATTCGGTTGTGTACGATAATGTGAAGCAAAAAATTGGTTGGAAGCGAGCAGACTGTGGCATGCCAAGCAGTAGATTAAGAAAGAAAAATAATTTCATCCCAGATAGTATGCTATAA

Predicted protein sequences of Glyma07g09980

Limit To All Plant Sequences

>Glyma07g09980.1   sequence type=predicted peptide   gene model=Glyma07g09980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDDQSTQIKGVVIISLPPPDNPSLGKTITAFAFSNNPSPPPQLFIQPHQHQSQQTHPNAQHNTDPPLQSYPSNPQLSFSFRRLFHSTPVKLFSFFGTLLFALFLYGSVSSTTTVDLRGRKNDGDDDKATSFLFPLFPKFGVLGQKDLKLQLGKLVQKEKFLTQRDVGDGSGVVAVDSSSVFPVSGNVYPDGLYFTILRVGNPPKSYFLDVDTGSDLTWMQCDAPCRSCGKGAHVQYKPTRSNVVSSVDSLCLDVQKNQKNGHHDESLLQCDYEIQYADHSSSLGVLVRDELHLVTTNGSKTKLNVVFGCGYDQEGLILNTLAKTDGIMGLSRAKVSLPYQLASKGLIKNVVGHCLSNDGAGGGYMFLGDDFVPYWGMNWVPMAYTLTTDLYQTEILGINYGNRQLKFDGQSKVGKVFFDSGSSYTYFPKEAYLDLVASLNEVSGLGLVQDDSDTTLPICWQANFQIRSIKDVKDYFKTLTLRFGSKWWILSTLFQIPPEGYLIISNKGHVCLGILDGSKVNDGSSIILGDISLRGYSVVYDNVKQKIGWKRADCGMPSSRLRKKNNFIPDSML*

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